Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs11085984 | chr19:15863230 | A/C | 0.00031 | 490 | 16.3 | 14.93 | 19.13 | KM Plot |
| THCA | rs11085985 | chr19:15864527 | G/T | 0.00031 | 490 | 16.3 | 14.93 | 19.13 | KM Plot |
| THCA | rs11086142 | chr20:61479137 | G/A | 4.74E-5 | 482 | 15.13 | 17 | 14.55 | KM Plot |
| THCA | rs11086984 | chr20:44511627 | C/T | 4.55E-7 | 490 | 15.87 | 17.6 | 13.83 | KM Plot |
| THCA | rs11109545 | chr12:99001794 | C/T | 3.21E-7 | 469 | 15 | 17.13 | 21.3 | KM Plot |
| THCA | rs111249277 | chr5:81268294 | C/A | 8.87E-5 | 486 | 15.9 | 16.3 | 17.97 | KM Plot |
| THCA | rs11125157 | chr2:48222472 | A/T | 0.000299 | 485 | 14.87 | 16.23 | 15.95 | KM Plot |
| THCA | rs111255903 | chr20:61495526 | C/T | 4.96E-5 | 482 | 15.15 | 17.23 | 14.55 | KM Plot |
| THCA | rs11127759 | chr3:67877625 | G/A | 0.000245 | 485 | 15.7 | 17.6 | 14.03 | KM Plot |
| THCA | rs111278264 | chr10:104895297 | C/T | 5.06E-9 | 489 | 15.27 | 17.68 | 32.1 | KM Plot |
| THCA | rs111305106 | chr13:24893135 | A/G | 0.000312 | 485 | 15.17 | 17.77 | 17.08 | KM Plot |
| THCA | rs111315781 | chr2:201738724 | T/A | 6.07E-5 | 483 | 16.32 | 15 | 3.78 | KM Plot |
| THCA | rs111342176 | chr3:74601949 | C/CTGTT | 1.89E-5 | 488 | 15.33 | 17 | 18.85 | KM Plot |
| THCA | rs111362970 | chr10:100130105 | C/T | 0 | 487 | 16.02 | 16.15 | 5.8 | KM Plot |
| THCA | rs111364472 | chr15:41345519 | G/A | 0.000136 | 490 | 15.17 | 16.3 | 16.83 | KM Plot |